Molecular alterations
The most frequently mutated and/or amplified genes in
the tumour cells are TP53 (41% of tumours), PIK3CA
(30%), MYC (20%), PTEN (16%), CCND1 (16%), ERBB2
(13%), FGFR1 (11%) and GATA3 (10%), as reported in
a series of early breast cancers. These genes
encode cell-cycle modulators that are either repressed
(for example, p53) or activated (for example, cyclin D1),
sustaining proliferation and/or inhibiting apoptosis,
inhibiting oncogenic pathways that are activated (MYC,
HER2 and FGFR1) or inhibiting elements that are no
longer repressed (PTEN).
The majority of the mutations
affecting 100 putative breast cancer drivers are extremely
rare, therefore, most breast cancers are caused by
multiple, low-penetrant mutations that act cumulatively. Luminal A tumours have a high prevalence of
PIK3CA mutations (49%), whereas a high prevalence
of TP53 mutations is a hallmark of basal-like tumours
(84%).
For TNBC, different molecular drivers under-
line its subtypes. At the metastatic stage, specific
predictive alterations, such as PIK3CA mutations, can be
easily detected non-invasively in the plasma in circulat-
ing tumour DNA rather than on tumour biopsy; never-
theless, depending on the technology used, the level of
sensitivity may vary.
Epigenetic alterations are involved in breast carcinogenesis and progression. In breast cancer, genes can be
either globally hypomethylated (leading to gene activation, upregulation of oncogenes and chromosomal
instability) or, less frequently, focally (locus-specific)
hypermethylated (leading to gene repression and
genetic instability due to the silencing of DNA repair
genes).
Other epigenetic mechanisms involve histone
tail modifications by DNA methylation, inducing chromatin structure changes to silence gene expression and
nucleosomal remodelling. These changes are reversible,
enzyme-mediated and potentially targetable. For example, in luminal-like breast cancer cell lines, inhibition of
histone deacetylase with specific inhibitors such as vorinostat or chidamide can reverse resistance to endocrine therapy via inhibition of the resistance pathway
driven by epidermal growth factor receptor signalling.
Recently, a phase III trial in metastatic luminal breast
cancer showed the superiority of a treatment combining chidamide with endocrine therapy (namely, the
aromatase inhibitor exemestane) to exemestane alone.